Experiments were carried out with super high yielding three line hybrid rice Xieyou 9308 and two line hybrid rice Liangyoupeijiu in the field and pot experiment. Results showed that 89%-98% of roots distributed within 15 cm of soil layer at panicle initiation and flowering stage in the field conditions and percentage of deep roots between hills was higher than that in the center of hills. Roots biomass and percentage of deep roots of Xieyou 9308 with lower senescence of leaf was higher than those of Liangyoupeijiu. Under the higher soil compaction, root biomass decreased, and the amount and percentage of deep roots decreased also. Effects of deep tillage on root growth and distribution of rice were discussed.