|
QTL Analysis of the Anoxic Tolerance at the Seedling Stage in Rice
WANG Yang,GUO Yuan,HONG Delin
2010, 24(1):
18-24 .
DOI: 10.3969/j.issn.1001-7216.2010.01.04
Coleoptile lengths(CL) of seedlings at 7 days after germination under anoxic stress and normal conditions were investigated in two permanently segregated populations and their parents in rice (Oryza sativa L.). By using anoxic response index, a ratio of CL under anoxic stress to CL under normal conditions, as indicator of seedling anoxic tolerance (SAT), QTLs for SAT were detected. Two loci controlling SAT, designated as qSAT-2-R and qSAT-7-R, were detected in the RIL population (247 lines) derived from a cross between Xiushui 79(japonica cultivar) and C Bao(japonica restorer line). qSAT-2-R, explaining 8.7% of phenotypic variation, was tightly linked with the SSR marker RM525. qSAT-7-R, explaining 9.8% of phenotypic variation, was tightly linked with the marker RM418. The positive alleles of the two loci came from C Bao. Six loci controlling SAT, designated as qSAT-2-B, qSAT-3-B, qSAT-5-B, qSAT-8-B, qSAT-9-B and qSAT-12-B, were detected in the BIL population (98 lines) derived from a backcross of Nipponbare (japonica) /Kasalath (indica)//Nipponbare(japonica). The positive alleles of qSAT-2-B, qSAT-3-B and qSAT-9-B, which explained 16.2%, 11.4% and 9.5% of phenotypic variation, respectively, came from Nipponbare. The positive alleles qSAT-5-B, qSAT-8-B and qSAT-12-B, which explained 7.3%, 5.8% and 14.0% of phenotypic variation, respectively, were from Kasalath. The RFLP marker C747, linked tightly with qSAT-2-B, corresponded to the SSR marker RM1367 according to physical map. Genetic distance between qSAT-2-R and qSAT-2-B was 7.2 cM.
|